Transcript: LINC00588:1

Basic information

LNCipedia transcript ID: LINC00588:1 
HGNC Gene Symbol: LINC00588    
HGNC Full Gene Name: long intergenic non-protein coding RNA 588
Ensembl Gene ID: ENSG00000215117
Ensembl Transcript ID: ENST00000521663
RefSeq ID: NR_026772
Location (hg38): chr8:57279543-57284731
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1875 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000521663; ENST00000521663.1; LINC00588-001; OTTHUMT00000378704.1; NONHSAT126746; NR_026772; NR_026772.1
Alternative gene names: ENSG00000215117; C8orf71; ENSG00000215117.5; LINC00588; OTTHUMG00000164424.1; DKFZP434F122


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.4565 non-coding 
CPAT coding probability 45.62% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00588:1 no no no no

Available literature

  1. Wiemann (2001), Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM110B-6:1
3.1 lnc-FAM110B-6:1
4.0 LINC00588:1
4.1 LINC00588:1
5.0 LINC00588:1
5.1 LINC00588:1
5.2 LINC00588:1