Transcript: LINC00583:1

Basic information

LNCipedia transcript ID: LINC00583:1 
HGNC Gene Symbol: LINC00583    
HGNC Full Gene Name: long intergenic non-protein coding RNA 583
Ensembl Gene ID: ENSG00000205636
Ensembl Transcript ID: ENST00000381010
Location (hg38): chr9:13927971-13945610
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 387 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT130238; ENST00000381010.3
Alternative gene names: ENSG00000205636.3; LINC00583;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -411.9791 non-coding 
CPAT coding probability 2.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00583:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf146-4:1
4.0 LINC00583:1
4.1 LINC00583:1
5.0 LINC00583:1
5.1 LINC00583:1
5.2 LINC00583:1