Transcript: LINC00544:4

Basic information

LNCipedia transcript ID: LINC00544:4 
LNCipedia gene ID: LINC00544
Location (hg38): chr13:29937924-29950451
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00021482
Alternative gene names: XLOC_010332; linc-USPL1-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -184.9933 non-coding 
CPAT coding probability 9.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00544:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTUS2-3:2
3.1 lnc-RP11-90M5.1.1-1:2
4.0 LINC00544:4
4.1 LINC00544:4
5.0 LINC00544:4
5.1 LINC00544:4
5.2 LINC00544:4