Transcript: LINC00544:2

Basic information

LNCipedia transcript ID: LINC00544:2 
LNCipedia gene ID: LINC00544
RefSeq ID: NR_033889
Location (hg38): chr13:29936531-29950488
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 696 bp
Exons: 5
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021469; NONHSAT032758; NR_033889; NR_033889.1
Alternative gene names: XLOC_010332; linc-USPL1-5; ; LINC00544


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.2039 non-coding 
CPAT coding probability 9.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00544:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MTUS2-3:1
3.1 lnc-RP11-90M5.1.1-1:1
4.0 LINC00544:2
4.1 LINC00544:2
5.0 LINC00544:2
5.1 LINC00544:2
5.2 LINC00544:2