Transcript: LINC00544:1

Basic information

LNCipedia transcript ID: LINC00544:1 
HGNC Gene Symbol: LINC00544    
HGNC Full Gene Name: long intergenic non-protein coding RNA 544
Ensembl Gene ID: ENSG00000122043
Ensembl Transcript ID: ENST00000400540
Location (hg38): chr13:29935905-29950488
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1031 bp
Exons: 6
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT032757; ENST00000400540.1; ENST00000400540.5
Alternative gene names: ENSG00000122043.6; LINC00544; ENSG00000122043.10;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.2039 non-coding 
CPAT coding probability 9.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00544:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-90M5.1.1-1:3
4.0 LINC00544:1
4.1 LINC00544:1
5.0 LINC00544:1
5.1 LINC00544:1
5.2 LINC00544:1