Transcript: LINC00485:2

Basic information

LNCipedia transcript ID: LINC00485:2 
LNCipedia gene ID: LINC00485
RefSeq ID: NR_033855
Location (hg38): chr12:102809283-102824399
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3719 bp
Exons: 5
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00020172; NR_033855; NR_033855.1
Alternative gene names: XLOC_010175; linc-IGF1; ; LINC00485


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.5223 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00485:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PAH-1:2
3.1 lnc-PAH-1:2
4.0 LINC00485:2
4.1 LINC00485:2
5.0 LINC00485:2
5.1 LINC00485:2
5.2 LINC00485:2