Transcript: LINC00470:7

Basic information

LNCipedia transcript ID: LINC00470:7 
LNCipedia gene ID: LINC00470
Location (hg38): chr18:1269821-1359629
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000334697.3; LINC00470-202; NONHSAT056896
Alternative gene names: ENSG00000132204.9; LINC00470; OTTHUMG00000178327.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5633 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00470:7 no no no no

Available literature

  1. Liu (2018), A cytoplasmic long noncoding RNA LINC00470 as a new AKT activator to mediate glioblastoma cell autophagy., J Hematol Oncol
  2. Stöhr (2000), EST mining of the UniGene dataset to identify retina-specific genes., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00470-1:7
4.0 LINC00470:7
4.1 LINC00470:7
5.0 LINC00470:7
5.1 LINC00470:7
5.2 LINC00470:7