Transcript: LINC00470:4

Basic information

LNCipedia transcript ID: LINC00470:4 
LNCipedia gene ID: LINC00470
Location (hg38): chr18:1258311-1397180
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2031 bp
Exons: 5
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc002kld_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.3483 non-coding 
CPAT coding probability 0.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00470:4 no no no no

Available literature

  1. Liu (2018), A cytoplasmic long noncoding RNA LINC00470 as a new AKT activator to mediate glioblastoma cell autophagy., J Hematol Oncol
  2. Stöhr (2000), EST mining of the UniGene dataset to identify retina-specific genes., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00470-1:14
4.0 LINC00470:4
4.1 LINC00470:4
5.0 LINC00470:4
5.1 LINC00470:4
5.2 LINC00470:4