Transcript: LINC00470:14

Basic information

LNCipedia transcript ID: LINC00470:14 
HGNC Gene Symbol: LINC00470    
HGNC Full Gene Name: long intergenic non-protein coding RNA 470
Ensembl Gene ID: ENSG00000132204
Ensembl Transcript ID: ENST00000584492
Location (hg38): chr18:1269176-1359590
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1281 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584492.1; LINC00470-006; OTTHUMT00000441553.1; ENST00000584492.5
Alternative gene names: ENSG00000132204.9; LINC00470; OTTHUMG00000178327.2; ENSG00000132204.13;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.5633 non-coding 
CPAT coding probability 3.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00470:14 no no no no

Available literature

  1. Liu (2018), A cytoplasmic long noncoding RNA LINC00470 as a new AKT activator to mediate glioblastoma cell autophagy., J Hematol Oncol
  2. Stöhr (2000), EST mining of the UniGene dataset to identify retina-specific genes., Cytogenet. Cell Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00470-1:8
4.0 LINC00470:14
4.1 LINC00470:14
5.0 LINC00470:14
5.1 LINC00470:14
5.2 LINC00470:14