Transcript: LINC00400:1

Basic information

LNCipedia transcript ID: LINC00400:1 
LNCipedia gene ID: LINC00400
RefSeq ID: NR_047013
Location (hg38): chr13:43113165-43159466
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 664 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047013; NR_047013.1
Alternative gene names: ; LINC00400


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -176.1055 non-coding 
CPAT coding probability 3.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00400:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAJC15-1:2
4.0 LINC00400:1
4.1 LINC00400:1
5.0 LINC00400:1
5.1 LINC00400:1
5.2 LINC00400:1