Transcript: LINC00348:1

Basic information

LNCipedia transcript ID: LINC00348:1 
HGNC Gene Symbol: LINC00348    
HGNC Full Gene Name: long intergenic non-protein coding RNA 348
Ensembl Gene ID: ENSG00000226846
Ensembl Transcript ID: ENST00000428761
RefSeq ID: NR_047699
Location (hg38): chr13:71015141-71168417
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 948 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021565; ENST00000428761; ENST00000428761.1; LINC00348-001; OTTHUMT00000045235.1; NONHSAT034257; NR_047699; NR_047699.1
Alternative gene names: XLOC_010423; linc-C13orf34-2; ENSG00000226846; RP11-77P3.1; ENSG00000226846.1; LINC00348; OTTHUMG00000017059.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.2323 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00348:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BORA-2:1
3.1 lnc-BORA-2:1
4.0 LINC00348:1
4.1 LINC00348:1
5.0 LINC00348:1
5.1 LINC00348:1
5.2 LINC00348:1