Transcript: LINC00346:4

Basic information

LNCipedia transcript ID: LINC00346:4 
HGNC Gene Symbol: LINC00346    
HGNC Full Gene Name: long intergenic non-protein coding RNA 346
Ensembl Gene ID: ENSG00000255874
Ensembl Transcript ID: ENST00000538077
Location (hg38): chr13:110863987-110870251
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6265 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538077.2
Alternative gene names: ENSG00000255874.2; LINC00346;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 14.6553 non-coding 
CPAT coding probability 53.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00346:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00346:4
4.1 LINC00346:4
5.0 LINC00346:4
5.1 LINC00346:4
5.2 LINC00346:4