Transcript: LINC00293:1

Basic information

LNCipedia transcript ID: LINC00293:1 
HGNC Gene Symbol: LINC00293    
HGNC Full Gene Name: long intergenic non-protein coding RNA 293
Ensembl Gene ID: ENSG00000253314
Ensembl Transcript ID: ENST00000519008
Location (hg38): chr8:46822237-46848066
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000519008.1; LINC00293-002; OTTHUMT00000377388.1; NONHSAT126412; ENST00000519008.5
Alternative gene names: ENSG00000253314.1; LINC00293; OTTHUMG00000164130.2; ENSG00000253314.5; BEYLA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -0.8142 non-coding 
CPAT coding probability 3.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00293:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-1134I14.8.1-3:1
4.0 LINC00293:1
4.1 LINC00293:1
5.0 LINC00293:1
5.1 LINC00293:1
5.2 LINC00293:1