Transcript: LINC00237:3

Basic information

LNCipedia transcript ID: LINC00237:3 
LNCipedia gene ID: LINC00237
Location (hg38): chr20:21093549-21101559
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00028014; ENST00000455890; ENST00000455890.1; LINC00237-003; OTTHUMT00000078256.1
Alternative gene names: XLOC_013675; linc-RALGAPA2-2; ENSG00000225127; NCRNA00237; ENSG00000225127.1; LINC00237; OTTHUMG00000032017.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -305.1347 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00237:3 no no no no

Available literature

  1. Vu (2012), A homozygous balanced reciprocal translocation suggests LINC00237 as a candidate gene for MOMO (macrosomia, obesity, macrocephaly, and ocular abnormalities) syndrome., Am. J. Med. Genet. A


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NKX2-4-3:2
3.1 lnc-NKX2-4-3:2
4.0 LINC00237:3
4.1 LINC00237:3
5.0 LINC00237:3
5.1 LINC00237:3
5.2 LINC00237:3