Transcript: LIN28B-AS1:1

Basic information

LNCipedia transcript ID: LIN28B-AS1:1 
HGNC Gene Symbol: LIN28B-AS1    
HGNC Full Gene Name: LIN28B antisense RNA 1
Ensembl Gene ID: ENSG00000203809
Ensembl Transcript ID: ENST00000369123
RefSeq ID: NR_046407
Location (hg38): chr6:104936294-104940527
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 575 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000369123.3; LINC00577-001; OTTHUMT00000041645.2; NONHSAT114203; NR_046407; NR_046407.1
Alternative gene names: ENSG00000203809.5; LINC00577; OTTHUMG00000015289.2; dJ439I14.1; ENSG00000203809.6; LIN28B-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.0642 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LIN28B-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HACE1-2:1
4.0 LIN28B-AS1:1
4.1 LIN28B-AS1:1
5.0 LIN28B-AS1:1
5.1 LIN28B-AS1:1
5.2 LIN28B-AS1:1