Transcript: HIPK1-AS1:1

Basic information

LNCipedia transcript ID: HIPK1-AS1:1 
LNCipedia gene ID: HIPK1-AS1
RefSeq ID: NR_110726
Location (hg38): chr1:113924001-113929525
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 641 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110726; NR_110726.1
Alternative gene names: ; HIPK1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -56.1861 non-coding 
CPAT coding probability 3.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
HIPK1-AS1:1 no no no no

Available literature

  1. Soibam (2017), Super-lncRNAs: identification of lncRNAs that target super-enhancers via RNA:DNA:DNA triplex formation., RNA


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP4B1-1:5
4.0 HIPK1-AS1:1
4.1 HIPK1-AS1:1
5.0 HIPK1-AS1:1
5.1 HIPK1-AS1:1
5.2 HIPK1-AS1:1