Transcript: DHRS4-AS1:4

Basic information

LNCipedia transcript ID: DHRS4-AS1:4 
HGNC Gene Symbol: DHRS4-AS1    
HGNC Full Gene Name: DHRS4 antisense RNA 1
Ensembl Gene ID: ENSG00000215256
Ensembl Transcript ID: ENST00000556379
RefSeq ID: NR_023924
Location (hg38): chr14:23938731-23954197
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2852 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000556379.1; DHRS4-AS1-007; OTTHUMT00000415722.1; NONHSAT035955; NR_023924; NR_023924.2
Alternative gene names: ENSG00000215256.3; DHRS4-AS1; OTTHUMG00000171901.1; PRO1488; AS1DHRS4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4665 non-coding 
CPAT coding probability 37.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
DHRS4-AS1:4 yes no no no

Available literature

  1. Yang (2016), Enhancer RNA-driven looping enhances the transcription of the long noncoding RNA DHRS4-AS1, a controller of the DHRS4 gene cluster., Sci Rep
  2. Li (2012), AS1DHRS4, a head-to-head natural antisense transcript, silences the DHRS4 gene cluster in cis and trans., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRL-1:2
4.0 DHRS4-AS1:4
4.1 DHRS4-AS1:4
5.0 DHRS4-AS1:4
5.1 DHRS4-AS1:4
5.2 DHRS4-AS1:4