Transcript: DHRS4-AS1:2

Basic information

LNCipedia transcript ID: DHRS4-AS1:2 
LNCipedia gene ID: DHRS4-AS1
RefSeq ID: NR_023922
Location (hg38): chr14:23938731-23955112
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2793 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_023922; NR_023922.2
Alternative gene names: PRO1488; AS1DHRS4; DHRS4-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.4665 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
DHRS4-AS1:2 yes no no no

Available literature

  1. Yang (2016), Enhancer RNA-driven looping enhances the transcription of the long noncoding RNA DHRS4-AS1, a controller of the DHRS4 gene cluster., Sci Rep
  2. Li (2012), AS1DHRS4, a head-to-head natural antisense transcript, silences the DHRS4 gene cluster in cis and trans., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRL-1:7
4.0 DHRS4-AS1:2
4.1 DHRS4-AS1:2
5.0 DHRS4-AS1:2
5.1 DHRS4-AS1:2
5.2 DHRS4-AS1:2