Transcript: COL5A1-AS1:1

Basic information

LNCipedia transcript ID: COL5A1-AS1:1 
HGNC Gene Symbol: COL5A1-AS1    
HGNC Full Gene Name: COL5A1 antisense RNA 1
Ensembl Gene ID: ENSG00000204011
Ensembl Transcript ID: ENST00000371813
Location (hg38): chr9:134649385-134652843
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 336 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT135404; ENST00000371813.4
Alternative gene names: ENSG00000204011.4; COL5A1-AS1; bA54A22.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.7484 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
COL5A1-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf104-3:1
4.0 COL5A1-AS1:1
4.1 COL5A1-AS1:1
5.0 COL5A1-AS1:1
5.1 COL5A1-AS1:1
5.2 COL5A1-AS1:1