Transcript: CASC20:2

Basic information

LNCipedia transcript ID: CASC20:2 
HGNC Gene Symbol: CASC20    
HGNC Full Gene Name: cancer susceptibility 20
Ensembl Gene ID: ENSG00000229876
Ensembl Transcript ID: ENST00000415932
Location (hg38): chr20:6446723-6528459
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1484 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027897; ENST00000415932; ENST00000415932.1; RP11-199O14.1-001; OTTHUMT00000077916.1; NONHSAT147153
Alternative gene names: XLOC_013451; linc-BMP2-1; ENSG00000229876; RP11-199O14.1; ENSG00000229876.1; OTTHUMG00000031831.1; CASC20;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.4075 non-coding 
CPAT coding probability 5.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
CASC20:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BMP2-1:1
3.1 lnc-BMP2-1:1
4.0 CASC20:2
4.1 CASC20:2
5.0 CASC20:2
5.1 CASC20:2
5.2 CASC20:2