Transcript: lnc-TMPRSS15-11:1

Basic information

LNCipedia transcript ID: lnc-TMPRSS15-11:1 
LNCipedia gene ID: lnc-TMPRSS15-11
Ensembl Gene ID: ENSG00000237527
Ensembl Transcript ID: ENST00000416182
Location (hg38): chr21:21655038-21686329
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 480 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028881; ENST00000416182; ENST00000416182.1; AF241725.6-001; OTTHUMT00000170921.1; NONHSAT081381
Alternative gene names: XLOC_014020; linc-TMPRSS15-18; ENSG00000237527; AF241725.6; ENSG00000237527.1; OTTHUMG00000078124.1; AF241725.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.996 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TMPRSS15-11:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMPRSS15-10:1
3.1 lnc-TMPRSS15-11:1
4.0 lnc-TMPRSS15-11:1
4.1 lnc-TMPRSS15-11:1
5.0 lnc-TMPRSS15-11:1
5.1 lnc-N6AMT1-58:1
5.2 lnc-TMPRSS15-11:1