Transcript: lnc-TAF1B-1:1

Basic information

LNCipedia transcript ID: lnc-TAF1B-1:1 
LNCipedia gene ID: lnc-TAF1B-1
Ensembl Gene ID: ENSG00000244260
Ensembl Transcript ID: ENST00000483023
Location (hg38): chr2:9674023-9708413
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1852 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002817; ENST00000483023; ENST00000483023.1; RP11-521D12.2-001; OTTHUMT00000353415.1; NONHSAT069064
Alternative gene names: XLOC_001340; linc-TAF1B-1; ENSG00000244260; RP11-521D12.2; ENSG00000244260.1; OTTHUMG00000159120.1; AC082651.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.5413 non-coding 
CPAT coding probability 36.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TAF1B-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TAF1B-1:1
3.1 lnc-TAF1B-1:1
4.0 lnc-TAF1B-1:1
4.1 lnc-TAF1B-1:1
5.0 lnc-TAF1B-1:1
5.1 lnc-SNX17-207:1
5.2 lnc-TAF1B-1:1