Transcript: lnc-PABPC4L-2:2

Basic information

LNCipedia transcript ID: lnc-PABPC4L-2:2 
LNCipedia gene ID: lnc-PABPC4L-2
Ensembl Gene ID: ENSG00000249463
Ensembl Transcript ID: ENST00000510967
Location (hg38): chr4:132027175-132028434
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 347 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007832; ENST00000510967; ENST00000510967.1; RP11-1E22.1-001; OTTHUMT00000364253.1; NONHSAT098331
Alternative gene names: XLOC_004078; linc-SCLT1-6; ENSG00000249463; RP11-1E22.1; ENSG00000249463.1; OTTHUMG00000161234.1; AC096711.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -165.2629 non-coding 
CPAT coding probability 2.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PABPC4L-2:2 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-62N21.1.1-1:2
3.1 lnc-RP11-62N21.1.1-1:2
4.0 lnc-RP11-62N21.1.1-1:2
4.1 lnc-RP11-62N21.1.1-1:2
5.0 lnc-RP11-62N21.1.1-1:2
5.1 lnc-CLGN-66:2
5.2 lnc-PABPC4L-2:2