Transcript: lnc-USP44-5:1

Basic information

LNCipedia transcript ID: lnc-USP44-5:1 
LNCipedia gene ID: lnc-USP44-5
Location (hg38): chr12:95388599-95405504
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000548194; ENST00000548194.1; RP11-167N24.4-001; OTTHUMT00000408217.1; NONHSAT030025
Alternative gene names: ENSG00000257583; RP11-167N24.4; ENSG00000257583.1; OTTHUMG00000170259.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP44-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-167N24.6.1-3:1
3.1 lnc-RP11-167N24.6.1-3:1
4.0 lnc-RP11-167N24.6.1-3:1
4.1 lnc-RP11-167N24.6.1-3:1
5.0 lnc-RP11-167N24.6.1-3:1
5.1 lnc-NTN4-11:1
5.2 lnc-USP44-5:1