Transcript: LINC02378:3

Basic information

LNCipedia transcript ID: LINC02378:3 
HGNC Gene Symbol: LINC02378    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2378
Ensembl Gene ID: ENSG00000256994
Ensembl Transcript ID: ENST00000540399
Location (hg38): chr12:17509353-17589992
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1003 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000540399; ENST00000540399.1; RP11-871F6.3-001; OTTHUMT00000401154.2; NONHSAT027169
Alternative gene names: ENSG00000256994; RP11-871F6.3; ENSG00000256994.1; OTTHUMG00000168808.2; LINC02378


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.9392 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02378:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RERGL-1:1
3.1 lnc-RERGL-1:1
4.0 lnc-RERGL-1:1
4.1 lnc-RERGL-1:1
5.0 lnc-RERGL-1:1
5.1 LINC02378:2
5.2 LINC02378:3