Transcript: LINC01674:4

Basic information

LNCipedia transcript ID: LINC01674:4 
HGNC Gene Symbol: LINC01674    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1674
Ensembl Gene ID: ENSG00000228159
Ensembl Transcript ID: ENST00000427446
RefSeq ID: NR_110544
Location (hg38): chr21:13546033-13558461
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 504 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000427446; ENST00000427446.1; AP001465.5-001; OTTHUMT00000157670.1; NONHSAT081108; NR_110544.1
Alternative gene names: ENSG00000228159; AP001465.5; ENSG00000228159.1; OTTHUMG00000074207.1; LINC01674; LOC102724188


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.5839 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01674:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-POTED-1:1
3.1 lnc-POTED-1:1
4.0 lnc-POTED-1:1
4.1 lnc-POTED-1:1
5.0 lnc-POTED-1:1
5.1 LINC01674:2
5.2 LINC01674:4