Transcript: lnc-ERAL1-8:5

Basic information

LNCipedia transcript ID: lnc-ERAL1-8:5 
LNCipedia gene ID: lnc-ERAL1-8
Ensembl Gene ID: ENSG00000238007
Ensembl Transcript ID: ENST00000436028
Location (hg38): chr17:29012865-29016512
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 224 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025163; ENST00000436028; ENST00000436028.1; AC024619.2-001; OTTHUMT00000256289.1
Alternative gene names: XLOC_012160; linc-PIPOX-1; ENSG00000238007; AC024619.2; ENSG00000238007.1; OTTHUMG00000132826.1; AC024619.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -434.2604 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ERAL1-8:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PIPOX-1:3
3.1 lnc-PIPOX-1:3
4.0 lnc-PIPOX-1:3
4.1 lnc-PIPOX-1:3
5.0 lnc-PIPOX-1:3
5.1 lnc-NSRP1-33:5
5.2 lnc-ERAL1-8:5