Transcript: lnc-NKX2-4-6:1

Basic information

LNCipedia transcript ID: lnc-NKX2-4-6:1 
LNCipedia gene ID: lnc-NKX2-4-6
Ensembl Gene ID: ENSG00000275457
Ensembl Transcript ID: ENST00000622628
Location (hg38): chr20:21302731-21303704
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 974 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000622628.1
Alternative gene names: ENSG00000275457.1; RP1-198K11.5; AL117332.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 25.8084 non-coding 
CPAT coding probability 14.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NKX2-4-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-NKX2-4-6:1
4.1 lnc-NKX2-4-6:1
5.0 lnc-NKX2-4-6:1
5.1 lnc-CST4-69:3
5.2 lnc-NKX2-4-6:1