Transcript: lnc-MUC22-1:9

Basic information

LNCipedia transcript ID: lnc-MUC22-1:9 
LNCipedia gene ID: lnc-MUC22-1
Ensembl Gene ID: ENSG00000228789
Ensembl Transcript ID: ENST00000615046
Location (hg38): chr6:31054072-31059876
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1603 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000615046.4
Alternative gene names: ENSG00000228789.6; HCG22; ENSG00000228789.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -102.0605 non-coding 
CPAT coding probability 99.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MUC22-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-MUC22-1:9
4.1 lnc-MUC22-1:9
5.0 lnc-MUC22-1:9
5.1 lnc-TNF-38:6
5.2 lnc-MUC22-1:9