Transcript: lnc-MUC22-1:6

Basic information

LNCipedia transcript ID: lnc-MUC22-1:6 
LNCipedia gene ID: lnc-MUC22-1
Location (hg38): chr6:31054207-31059876
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5670 bp
Exons: 1
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011115; NONHSAT108716
Alternative gene names: XLOC_005243; linc-PSORS1C1-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.9182 non-coding 
CPAT coding probability 74.96% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MUC22-1:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MUC22-1:1
3.1 lnc-MUC22-1:6
4.0 lnc-MUC22-1:6
4.1 lnc-MUC22-1:6
5.0 lnc-MUC22-1:6
5.1 lnc-TNF-38:8
5.2 lnc-MUC22-1:6