Transcript: lnc-MAP3K4-2:1

Basic information

LNCipedia transcript ID: lnc-MAP3K4-2:1 
LNCipedia gene ID: lnc-MAP3K4-2
Ensembl Gene ID: ENSG00000233342
Ensembl Transcript ID: ENST00000420601
Location (hg38): chr6:160926369-160927162
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420601; ENST00000420601.1; RP11-235G24.3-001; OTTHUMT00000042973.1; NONHSAT115926; FPKM1_group_28813_transcript_1
Alternative gene names: ENSG00000233342; RP11-235G24.3; ENSG00000233342.1; OTTHUMG00000015961.1; AL391361.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.6275 non-coding 
CPAT coding probability 1.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K4-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAP3K4-2:1
3.1 lnc-MAP3K4-2:1
4.0 lnc-MAP3K4-2:1
4.1 lnc-MAP3K4-2:1
5.0 lnc-MAP3K4-2:1
5.1 lnc-SYTL3-36:2
5.2 lnc-MAP3K4-2:1