Transcript: lnc-KLHDC10-1:3

Basic information

LNCipedia transcript ID: lnc-KLHDC10-1:3 
LNCipedia gene ID: lnc-KLHDC10-1
Ensembl Gene ID: ENSG00000229196
Ensembl Transcript ID: ENST00000470348
Location (hg38): chr7:130141738-130142615
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00013079; ENST00000470348.1; RP11-775D22.2-001; OTTHUMT00000349336.1; NONHSAT123330
Alternative gene names: XLOC_006245; linc-C7orf45-2; ENSG00000229196.3; RP11-775D22.2; OTTHUMG00000157651.1; AC087071.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.8177 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KLHDC10-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLHDC10-1:2
3.1 lnc-KLHDC10-1:3
4.0 lnc-KLHDC10-1:3
4.1 lnc-KLHDC10-1:3
5.0 lnc-KLHDC10-1:3
5.1 lnc-KLHDC10-1:3
5.2 lnc-KLHDC10-1:3