Transcript: LINC02116:5

Basic information

LNCipedia transcript ID: LINC02116:5 
HGNC Gene Symbol: LINC02116    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2116
Ensembl Gene ID: ENSG00000250417
Ensembl Transcript ID: ENST00000509455
RefSeq ID: NR_104602
Location (hg38): chr5:1855970-1856568
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 493 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009581; ENST00000509455; ENST00000509455.1; CTD-2194D22.2-001; OTTHUMT00000365492.1; NR_104602; NR_104602.1
Alternative gene names: XLOC_004706; linc-MRPL36; ENSG00000250417; CTD-2194D22.2; ENSG00000250417.1; OTTHUMG00000161601.1; LINC02116; LOC101929034


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.9625 non-coding 
CPAT coding probability 4.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02116:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX4-1:1
3.1 lnc-IRX4-1:1
4.0 lnc-IRX4-1:1
4.1 lnc-IRX4-1:1
5.0 lnc-IRX4-1:1
5.1 LINC02116:3
5.2 LINC02116:5