Transcript: lnc-GREM2-7:1

Basic information

LNCipedia transcript ID: lnc-GREM2-7:1 
LNCipedia gene ID: lnc-GREM2-7
Location (hg38): chr1:239269725-239297937
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 448 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000769; ENST00000442410; ENST00000442410.1; RP11-544D21.1-001; OTTHUMT00000095448.1; NONHSAT010469
Alternative gene names: XLOC_001274; linc-ZP4-4; ENSG00000227185; RP11-544D21.1; ENSG00000227185.1; OTTHUMG00000039564.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.3619 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GREM2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GREM2-4:1
3.1 lnc-GREM2-7:1
4.0 lnc-GREM2-7:1
4.1 lnc-GREM2-7:1
5.0 lnc-GREM2-7:1
5.1 lnc-GREM2-7:1
5.2 lnc-GREM2-7:1