Transcript: lnc-RCN1-1:3

Basic information

LNCipedia transcript ID: lnc-RCN1-1:3 
LNCipedia gene ID: lnc-RCN1-1
Ensembl Gene ID: ENSG00000254627
Ensembl Transcript ID: ENST00000533832
Location (hg38): chr11:32064912-32072173
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 326 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533832.1; RP1-17K7.1-001; OTTHUMT00000388567.1; NONHSAT018646
Alternative gene names: ENSG00000254627.1; RP1-17K7.1; OTTHUMG00000166233.1; AL035078.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.7053 non-coding 
CPAT coding probability 3.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RCN1-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ELP4-1:1
4.0 lnc-ELP4-1:1
4.1 lnc-ELP4-1:1
5.0 lnc-ELP4-1:1
5.1 lnc-QSER1-10:1
5.2 lnc-RCN1-1:3