Transcript: lnc-CDON-2:6

Basic information

LNCipedia transcript ID: lnc-CDON-2:6 
LNCipedia gene ID: lnc-CDON-2
Ensembl Gene ID: ENSG00000261257
Ensembl Transcript ID: ENST00000567082
Location (hg38): chr11:126100505-126102413
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1909 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567082.1; RP11-673E11.2-001; OTTHUMT00000421726.1; NONHSAT024996
Alternative gene names: ENSG00000261257.1; RP11-673E11.2; OTTHUMG00000173018.1; AP000821.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -47.8606 non-coding 
CPAT coding probability 40.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CDON-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDON-1:1
4.0 lnc-CDON-1:1
4.1 lnc-CDON-1:1
5.0 lnc-CDON-1:1
5.1 lnc-ADAMTS8-48:6
5.2 lnc-CDON-2:6