Transcript: lnc-CAPN12-1:1

Basic information

LNCipedia transcript ID: lnc-CAPN12-1:1 
LNCipedia gene ID: lnc-CAPN12-1
Ensembl Gene ID: ENSG00000267375
Ensembl Transcript ID: ENST00000585999
Location (hg38): chr19:38683873-38693606
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 242 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT066230; ENST00000585999.1
Alternative gene names: ENSG00000267375.1; CTB-186G2.4; AC008649.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -194.8421 non-coding 
CPAT coding probability 0.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CAPN12-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CAPN12-1:1
4.0 lnc-CAPN12-1:1
4.1 lnc-CAPN12-1:1
5.0 lnc-CAPN12-1:1
5.1 lnc-CCER2-14:1
5.2 lnc-CAPN12-1:1