Transcript: lnc-GPATCH2L-1:7

Basic information

LNCipedia transcript ID: lnc-GPATCH2L-1:7 
LNCipedia gene ID: lnc-GPATCH2L-1
Location (hg38): chr14:76252096-76263492
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 306 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00022560; NONHSAT037905
Alternative gene names: XLOC_010879; linc-ESRRB-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.0599 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPATCH2L-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C14orf118-1:2
3.1 lnc-C14orf118-1:5
4.0 lnc-C14orf118-1:5
4.1 lnc-C14orf118-1:5
5.0 lnc-C14orf118-1:5
5.1 lnc-BATF-17:8
5.2 lnc-GPATCH2L-1:7