Transcript: lnc-ANKRD50-3:1

Basic information

LNCipedia transcript ID: lnc-ANKRD50-3:1 
LNCipedia gene ID: lnc-ANKRD50-3
Ensembl Gene ID: ENSG00000249837
Ensembl Transcript ID: ENST00000507299
Location (hg38): chr4:124149377-124252044
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 430 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007819; ENST00000507299; ENST00000507299.1; CTD-2325B11.1-001; OTTHUMT00000364755.2; NONHSAT098212
Alternative gene names: XLOC_004062; linc-NUDT6-3; ENSG00000249837; CTD-2325B11.1; ENSG00000249837.1; OTTHUMG00000161387.2; AC121154.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -210.9048 non-coding 
CPAT coding probability 2.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ANKRD50-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD50-3:1
3.1 lnc-ANKRD50-3:1
4.0 lnc-ANKRD50-3:1
4.1 lnc-ANKRD50-3:1
5.0 lnc-ANKRD50-3:1
5.1 lnc-TRPC3-15:1
5.2 lnc-ANKRD50-3:1