Transcript: PARAL1:6

Basic information

LNCipedia transcript ID: PARAL1:6 
LNCipedia gene ID: PARAL1
RefSeq ID: NR_109861
Location (hg38): chr20:9986333-10007116
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 791 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109861; NR_109861.1
Alternative gene names: LOC101929371


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.0286 non-coding 
CPAT coding probability 0.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PARAL1:6 no no no no

Available literature

  1. Firmin (2017), The RBM14/CoAA-interacting, long intergenic non-coding RNA Paral1 regulates adipogenesis and coactivates the nuclear receptor PPARγ., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ANKRD5-1:3
4.0 lnc-ANKRD5-1:3
4.1 lnc-ANKRD5-1:3
5.0 lnc-ANKRD5-1:3
5.1 PARAL1:4
5.2 PARAL1:6