Transcript: LINC01543:1

Basic information

LNCipedia transcript ID: LINC01543:1 
HGNC Gene Symbol: LINC01543    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1543
Ensembl Gene ID: ENSG00000263862
Ensembl Transcript ID: ENST00000578367
Location (hg38): chr18:26422995-26426101
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 900 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000578367.1; RP11-107K17.1-001; OTTHUMT00000446264.1; NONHSAT058748
Alternative gene names: ENSG00000263862.1; RP11-107K17.1; OTTHUMG00000179433.1; LINC01543; TCONS_00026302


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.6259 non-coding 
CPAT coding probability 1.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01543:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TAF4B-1:1
4.0 LINC01543:1
4.1 LINC01543:1
5.0 LINC01543:1
5.1 LINC01543:1
5.2 LINC01543:1